| COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets TM Delorey, CGK Ziegler, G Heimberg, R Normand, Y Yang, ... Nature 595 (7865), 107-113, 2021 | 665 | 2021 |
| Transcriptional and cellular diversity of the human heart NR Tucker, M Chaffin, SJ Fleming, AW Hall, VA Parsons, KC Bedi Jr, ... Circulation 142 (5), 466-482, 2020 | 422 | 2020 |
| Rare coding variation provides insight into the genetic architecture and phenotypic context of autism JM Fu, FK Satterstrom, M Peng, H Brand, RL Collins, S Dong, B Wamsley, ... Nature genetics 54 (9), 1320-1331, 2022 | 272 | 2022 |
| Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness F Obermeyer, M Jankowiak, N Barkas, SF Schaffner, JD Pyle, ... Science 376 (6599), 1327-1332, 2022 | 224 | 2022 |
| Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender SJ Fleming, MD Chaffin, A Arduini, AD Akkad, E Banks, JC Marioni, ... Nature methods 20 (9), 1323-1335, 2023 | 213 | 2023 |
| Competition between pairing and ferromagnetic instabilities in ultracold Fermi gases near Feshbach resonances D Pekker, M Babadi, R Sensarma, N Zinner, L Pollet, MW Zwierlein, ... Physical review letters 106 (5), 050402, 2011 | 183 | 2011 |
| CellBender remove-background: a deep generative model for unsupervised removal of background noise from scRNA-seq datasets SJ Fleming, JC Marioni, M Babadi BioRxiv 791699, 2019 | 173 | 2019 |
| Dynamical Cooper pairing in nonequilibrium electron-phonon systems M Knap, M Babadi, G Refael, I Martin, E Demler Physical Review B 94 (21), 214504, 2016 | 172 | 2016 |
| Theory of parametrically amplified electron-phonon superconductivity M Babadi, M Knap, I Martin, G Refael, E Demler Physical Review B 96 (1), 014512, 2017 | 147 | 2017 |
| Cancer-germline antigen expression discriminates clinical outcome to CTLA-4 blockade SA Shukla, P Bachireddy, B Schilling, C Galonska, Q Zhan, C Bango, ... Cell 173 (3), 624-633. e8, 2018 | 141 | 2018 |
| Dynamical stability of a many-body Kapitza pendulum R Citro, EG Dalla Torre, L D’Alessio, A Polkovnikov, M Babadi, T Oka, ... Annals of Physics 360, 694-710, 2015 | 109 | 2015 |
| Far-from-equilibrium field theory of many-body quantum spin systems: Prethermalization and relaxation of spin spiral states in three dimensions M Babadi, E Demler, M Knap Physical Review X 5 (4), 041005, 2015 | 108 | 2015 |
| High-throughput RNA isoform sequencing using programmed cDNA concatenation AM Al’Khafaji, JT Smith, KV Garimella, M Babadi, V Popic, ... Nature Biotechnology 42 (4), 582-586, 2024 | 70 | 2024 |
| Coarse-grained interaction potentials for anisotropic molecules M Babadi, R Everaers, MR Ejtehadi The Journal of chemical physics 124 (17), 2006 | 52 | 2006 |
| Learning representations for image-based profiling of perturbations N Moshkov, M Bornholdt, S Benoit, M Smith, C McQuin, A Goodman, ... Nature communications 15 (1), 1594, 2024 | 51 | 2024 |
| Density ordering instabilities of quasi-two-dimensional fermionic polar molecules in single-layer and multilayer configurations: Exact treatment of exchange interactions M Babadi, E Demler Physical Review B—Condensed Matter and Materials Physics 84 (23), 235124, 2011 | 49 | 2011 |
| A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2 TM Delorey, CGK Ziegler, G Heimberg, R Normand, Y Yang, ... Biorxiv, 2021 | 41 | 2021 |
| Multiple-scale structures: from Faraday waves to soft-matter quasicrystals S Savitz, M Babadi, R Lifshitz IUCrJ 5 (3), 247-268, 2018 | 39 | 2018 |
| Rare coding variation illuminates the allelic architecture, risk genes, cellular expression patterns, and phenotypic context of autism JM Fu, FK Satterstrom, M Peng, H Brand, RL Collins, S Dong, L Klei, ... MedRxiv, 2021.12. 20.21267194, 2021 | 35 | 2021 |
| High-throughput RNA isoform sequencing using programmable cDNA concatenation AM Al’Khafaji, JT Smith, KV Garimella, M Babadi, M Sade-Feldman, ... Biorxiv, 2021.10. 01.462818, 2021 | 34 | 2021 |
