| What is flux balance analysis? JD Orth, I Thiele, BØ Palsson Nature biotechnology 28 (3), 245-248, 2010 | 4103 | 2010 |
| Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0 J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ... Nature protocols 6 (9), 1290-1307, 2011 | 1612 | 2011 |
| A comprehensive genome‐scale reconstruction of Escherichia coli metabolism—2011 JD Orth, TM Conrad, J Na, JA Lerman, H Nam, AM Feist, BØ Palsson Molecular systems biology 7 (1), 535, 2011 | 1279 | 2011 |
| In silico method for modelling metabolism and gene product expression at genome scale JA Lerman, DR Hyduke, H Latif, VA Portnoy, NE Lewis, JD Orth, ... Nature communications 3 (1), 929, 2012 | 342 | 2012 |
| Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments JM Monk, P Charusanti, RK Aziz, JA Lerman, N Premyodhin, JD Orth, ... Proceedings of the National Academy of Sciences 110 (50), 20338-20343, 2013 | 315 | 2013 |
| Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli AM Feist, DC Zielinski, JD Orth, J Schellenberger, MJ Herrgard, ... Metabolic engineering 12 (3), 173-186, 2010 | 293 | 2010 |
| Reconstruction and Use of Microbial Metabolic Networks: the Core Escherichia coli Metabolic Model as an Educational Guide JD Orth, RMT Fleming, BØ Palsson EcoSal plus 4 (1), 10.1128/ecosalplus. 10.2. 1, 2010 | 288 | 2010 |
| Systematizing the generation of missing metabolic knowledge JD Orth, BØ Palsson Biotechnology and bioengineering 107 (3), 403-412, 2010 | 192 | 2010 |
| EcoSal-Escherichia coli and Salmonella: cellular and molecular biology JD Orth, RM Fleming, BØ Palsson arXiv preprint arXiv:1312.5228, 2009 | 81 | 2009 |
| Gap-filling analysis of the iJO1366 Escherichia coli metabolic network reconstruction for discovery of metabolic functions JD Orth, BØ Palsson BMC systems biology 6, 1-15, 2012 | 80 | 2012 |
| Systems Biology Analysis of Escherichia coli for Discovery and Metabolic Engineering JD Orth University of California, San Diego, 2012 | 7 | 2012 |
| Genome-scale network modeling SY Lee, SB Sohn, HU Kim, JM Park, TY Kim, JD Orth, BØ Palsson Systems metabolic engineering, 1-23, 2012 | 2 | 2012 |
| Metabolic modeling of methanotroph biocatalysts for natural gas-to-liquids bioconversion J Orth 41st Symposium on Biotechnology for Fuels and Chemicals, 2019 | | 2019 |
