Icy: an open bioimage informatics platform for extended reproducible research F De Chaumont, S Dallongeville, N Chenouard, N Hervé, S Pop, ... Nature methods 9 (7), 690-696, 2012 | 1516 | 2012 |
Real-time analysis of the behaviour of groups of mice via a depth-sensing camera and machine learning F De Chaumont, E Ey, N Torquet, T Lagache, S Dallongeville, A Imbert, ... Nature biomedical engineering 3 (11), 930-942, 2019 | 137 | 2019 |
Mapping molecular assemblies with fluorescence microscopy and object-based spatial statistics T Lagache, A Grassart, S Dallongeville, O Faklaris, N Sauvonnet, ... Nature communications 9 (1), 698, 2018 | 98 | 2018 |
ICY: A new open-source community image processing software F de Chaumont, S Dallongeville, JC Olivo-Marin 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro …, 2011 | 48 | 2011 |
An approach for detection of glomeruli in multisite digital pathology R Marée, S Dallongeville, JC Olivo-Marin, V Meas-Yedid 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI), 1033-1036, 2016 | 42 | 2016 |
Live Mouse Tracker: real-time behavioral analysis of groups of mice F de Chaumont, E Ey, N Torquet, T Lagache, S Dallongeville, A Imbert, ... BioRxiv, 345132, 2018 | 29 | 2018 |
Interrogating RNA and protein spatial subcellular distribution in smFISH data with DypFISH AF Savulescu, R Brackin, E Bouilhol, B Dartigues, JH Warrell, ... Cell Reports Methods 1 (5), 2021 | 17 | 2021 |
Cell Tracking Profiler–a user-driven analysis framework for evaluating 4D live-cell imaging data C Mitchell, L Caroff, JA Solis-Lemus, CC Reyes-Aldasoro, A Vigilante, ... Journal of cell science 133 (22), jcs241422, 2020 | 6 | 2020 |
DypFISH: dynamic patterned FISH to interrogate RNA and protein spatial and temporal subcellular distribution AF Savulescu, R Brackin, E Bouilhol, B Dartigues, JH Warrell, ... bioRxiv, 536383, 2019 | 6 | 2019 |
Tracking multiple articulated objects using physics engines: Improvement using multi scale decomposition and quadtrees F de Chaumont, S Dallongeville, N Chenouard, JC Olivo-Marin 2010 IEEE International Conference on Image Processing, 4637-4640, 2010 | 6 | 2010 |
A Protocol to Quantify Cellular Morphodynamics: From Cell Labelling to Automatic Image Analysis M Manich, A Boquet-Pujadas, S Dallongeville, N Guillen, JC Olivo-Marin Eukaryome Impact on Human Intestine Homeostasis and Mucosal Immunology …, 2020 | 4 | 2020 |
DHA-containing phospholipids control membrane fusion and transcellular tunnel dynamics MC Tsai, L Fleuriot, S Janel, D Gonzalez-Rodriguez, C Morel, A Mettouchi, ... Journal of Cell Science 135 (5), jcs259119, 2022 | 3 | 2022 |
Icy: a user-friendly environment for algorithm development and deployment F de Chaumont, S Dallongeville, T Provoost, T Lecomte, A Dufour, ... 21st European Signal Processing Conference (EUSIPCO 2013), 1-5, 2013 | 3 | 2013 |
JDLL: a library to run deep learning models on Java bioimage informatics platforms C García López de Haro, S Dallongeville, T Musset, E Gómez-de-Mariscal, ... Nature Methods, 1-2, 2024 | 2 | 2024 |
Substructure analyzer: a user-friendly workflow for rapid exploration and accurate analysis of cellular bodies in fluorescence microscopy images G Heckler, C Aigueperse, L Hettal, Q Thuillier, F de Chaumont, ... JoVE (Journal of Visualized Experiments), e60990, 2020 | 1 | 2020 |
Docosahexaenoic fatty acid-containing phospholipids affect plasma membrane susceptibility to disruption by bacterial toxin-induced macroapertures MC Tsai, L Fleuriot, S Janel, D Gonzalez-Rodriguez, C Morel, A Mettouchi, ... bioRxiv, 2020.12. 23.424114, 2020 | | 2020 |
Semi-Automatic Quantification Of mRNA Expression In Whole-Slide Tissue Images V Meas-Yedid, O Fuica, M Boukerroucha, S El Guendi, S Dallongeville, ... Diagnostic Pathology 1 (8), 2016 | | 2016 |
Fabrice de Chaumont, Institut Pasteur, FRANCE S Dallongeville Pasteur Institute, 0 | | |