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Yanay Ofran
Yanay Ofran
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The structural basis of antibody-antigen recognition
I Sela-Culang, V Kunik, Y Ofran
Frontiers in immunology 4, 302, 2013
6712013
Analysing six types of protein–protein interfaces
Y Ofran, B Rost
Journal of molecular biology 325 (2), 377-387, 2003
5472003
Automatic prediction of protein function
B Rost, J Liu, R Nair, KO Wrzeszczynski, Y Ofran
Cellular and Molecular Life Sciences CMLS 60, 2637-2650, 2003
3452003
ISIS: interaction sites identified from sequence
Y Ofran, B Rost
Bioinformatics 23 (2), e13-e16, 2007
3412007
Predicted protein–protein interaction sites from local sequence information
Y Ofran, B Rost
FEBS letters 544 (1-3), 236-239, 2003
3392003
Protein–protein interaction hotspots carved into sequences
Y Ofran, B Rost
PLoS computational biology 3 (7), e119, 2007
3112007
Towards a consensus on datasets and evaluation metrics for developing B‐cell epitope prediction tools
JA Greenbaum, PH Andersen, M Blythe, HH Bui, RE Cachau, J Crowe, ...
Journal of Molecular Recognition: An Interdisciplinary Journal 20 (2), 75-82, 2007
2922007
Prediction of DNA-binding residues from sequence
Y Ofran, V Mysore, B Rost
Bioinformatics 23 (13), i347-i353, 2007
2072007
How far from the SNP may the causative genes be?
A Brodie, JR Azaria, Y Ofran
Nucleic acids research 44 (13), 6046-6054, 2016
1942016
Structural consensus among antibodies defines the antigen binding site
V Kunik, B Peters, Y Ofran
PLoS computational biology 8 (2), e1002388, 2012
1882012
Paratome: an online tool for systematic identification of antigen-binding regions in antibodies based on sequence or structure
V Kunik, S Ashkenazi, Y Ofran
Nucleic acids research 40 (W1), W521-W524, 2012
1682012
Land degradation is not a necessary outcome of communal pastoralism in arid Namibia
D Ward, BT Ngairorue, J Kathena, R Samuels, Y Ofran
Journal of Arid Environments 40 (4), 357-371, 1998
1501998
The rough guide to in silico function prediction, or how to use sequence and structure information to predict protein function
M Punta, Y Ofran
PLoS computational biology 4 (10), e1000160, 2008
1432008
A systematic comparison of free and bound antibodies reveals binding-related conformational changes
I Sela-Culang, S Alon, Y Ofran
The Journal of Immunology 189 (10), 4890-4899, 2012
1282012
Epitome: database of structure-inferred antigenic epitopes
A Schlessinger, Y Ofran, G Yachdav, B Rost
Nucleic acids research 34 (suppl_1), D777-D780, 2006
1122006
Beyond annotation transfer by homology: novel protein-function prediction methods to assist drug discovery
Y Ofran, M Punta, R Schneider, B Rost
Drug discovery today 10 (21), 1475-1482, 2005
1032005
The indistinguishability of epitopes from protein surface is explained by the distinct binding preferences of each of the six antigen-binding loops
V Kunik, Y Ofran
Protein Engineering, Design & Selection 26 (10), 599-609, 2013
1022013
Automated identification of complementarity determining regions (CDRs) reveals peculiar characteristics of CDRs and B cell epitopes
Y Ofran, A Schlessinger, B Rost
The Journal of Immunology 181 (9), 6230-6235, 2008
992008
Antibody specific epitope prediction—emergence of a new paradigm
I Sela-Culang, Y Ofran, B Peters
Current opinion in virology 11, 98-102, 2015
882015
Computational design of epitope-specific functional antibodies
G Nimrod, S Fischman, M Austin, A Herman, F Keyes, O Leiderman, ...
Cell reports 25 (8), 2121-2131. e5, 2018
762018
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