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Donghyo Kim
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OASIS 2: online application for survival analysis 2 with features for the analysis of maximal lifespan and healthspan in aging research
SK Han, D Lee, H Lee, D Kim, HG Son, JS Yang, SJV Lee, S Kim
Oncotarget 7 (35), 56147, 2016
3652016
Network-based machine learning in colorectal and bladder organoid models predicts anti-cancer drug efficacy in patients
JH Kong, H Lee, D Kim, SK Han, D Ha, K Shin, S Kim
Nature communications 11 (1), 5485, 2020
1102020
Capicua suppresses hepatocellular carcinoma progression by controlling the ETV4–MMP1 axis
E Kim, D Kim, JS Lee, J Yoe, J Park, CJ Kim, D Jeong, S Kim, Y Lee
Hepatology 67 (6), 2287-2301, 2018
802018
Capicua restricts cancer stem cell-like properties in breast cancer cells
J Yoe, D Kim, S Kim, Y Lee
Oncogene 39 (17), 3489-3506, 2020
212020
Divergence of noncoding regulatory elements explains gene–phenotype differences between human and mouse orthologous genes
SK Han, D Kim, H Lee, I Kim, S Kim
Molecular Biology and Evolution 35 (7), 1653-1667, 2018
192018
Capicua suppresses colorectal cancer progression via repression of ETV4 expression
JS Lee, E Kim, J Lee, D Kim, H Kim, CJ Kim, S Kim, D Jeong, Y Lee
Cancer Cell International 20, 1-11, 2020
172020
Evolutionary coupling analysis identifies the impact of disease-associated variants at less-conserved sites
D Kim, SK Han, K Lee, I Kim, JH Kong, S Kim
Nucleic Acids Research 47 (16), e94-e94, 2019
132019
Enzyme activity engineering based on sequence co-evolution analysis
D Kim, MH Noh, M Park, I Kim, H Ahn, D Ye, GY Jung, S Kim
Metabolic Engineering 74, 49-60, 2022
82022
Evolutionary rewiring of regulatory networks contributes to phenotypic differences between human and mouse orthologous genes
D Ha, D Kim, I Kim, Y Oh, JH Kong, SK Han, S Kim
Nucleic Acids Research 50 (4), 1849-1863, 2022
82022
Link clustering explains non-central and contextually essential genes in protein interaction networks
I Kim, H Lee, K Lee, SK Han, D Kim, S Kim
Scientific Reports 9 (1), 11672, 2019
42019
Domain-mediated interactions for protein subfamily identification
H Lee, I Kim, SK Han, D Kim, J Kong, S Kim
Scientific Reports 10 (1), 264, 2020
32020
Deconvolution of bulk tumors into distinct immune cell states predicts colorectal cancer recurrence
D Kim, J Kim, J Lee, SK Han, K Lee, JH Kong, YJ Kim, WY Lee, SH Yun, ...
Iscience 25 (11), 2022
22022
The implication of holocytochrome c synthase mutation in Korean familial hypoplastic amelogenesis imperfecta
H Choi, K Lee, D Kim, S Kim, JH Lee
Clinical Oral Investigations 26 (6), 4487-4498, 2022
22022
Drug approval prediction based on the discrepancy in gene perturbation effects between cells and humans
M Park, D Kim, I Kim, SH Im, S Kim
EBioMedicine 94, 2023
12023
Cell-cell communication network-based interpretable machine learning predicts cancer patient response to immune checkpoint inhibitors
J Lee, D Kim, JH Kong, D Ha, I Kim, M Park, K Lee, SH Im, S Kim
Science Advances 10 (5), eadj0785, 2024
2024
Information about immune cell proportions and tumor stage improves the prediction of recurrence in patients with colorectal cancer
JH Kong, J Kim, D Kim, K Lee, J Lee, SK Han, I Kim, S Lim, M Park, S Shin, ...
Patterns 4 (6), 2023
2023
An evolution-based machine learning to identify cancer type-specific driver mutations
D Kim, D Ha, K Lee, H Lee, I Kim, S Kim
Briefings in Bioinformatics 24 (1), bbac593, 2023
2023
Development of bioinformatics and multi-omics analyses in organoids
D Ha, JH Kong, D Kim, K Lee, J Lee, M Park, H Ahn, Y Oh, S Kim
BMB reports 56 (1), 43, 2023
2023
Drug approval prediction based on the discrepancy between gene perturbation effects in cells and humans
S Kim, M Park, D Kim, I Kim, SH Im
2022
Immune Cell Proportions and TNM Stage Improve the Prediction of Recurrence in Colorectal Cancer Patients
J Kong, J Kim, SK Han, D Kim, K Lee, J Lee, I Kim, S Lim, S Shin, WY Lee, ...
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Articles 1–20