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Justin Chu
Justin Chu
Dana-Farber Cancer Institute
Verified email at ds.dfci.harvard.edu
Title
Cited by
Cited by
Year
Comprehensive molecular characterization of gastric adenocarcinoma
Cancer Genome Atlas Research Network
Nature 513 (7517), 202, 2014
51702014
Somatic mutations at EZH2 Y641 act dominantly through a mechanism of selectively altered PRC2 catalytic activity, to increase H3K27 trimethylation
DB Yap, J Chu, T Berg, M Schapira, SWG Cheng, A Moradian, RD Morin, ...
Blood, The Journal of the American Society of Hematology 117 (8), 2451-2459, 2011
7092011
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter
SD Jackman, BP Vandervalk, H Mohamadi, J Chu, S Yeo, SA Hammond, ...
Genome research 27 (5), 768-777, 2017
6302017
A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
3462023
NanoSim: nanopore sequence read simulator based on statistical characterization
C Yang, J Chu, RL Warren, I Birol
GigaScience 6 (4), gix010, 2017
2252017
ARCS: scaffolding genome drafts with linked reads
S Yeo, L Coombe, RL Warren, J Chu, I Birol
Bioinformatics 34 (5), 725-731, 2018
1792018
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters
J Chu, S Sadeghi, A Raymond, SD Jackman, KM Nip, R Mar, ...
Bioinformatics 30 (23), 3402-3404, 2014
1192014
Tigmint: correcting assembly errors using linked reads from large molecules
SD Jackman, L Coombe, J Chu, RL Warren, BP Vandervalk, S Yeo, Z Xue, ...
BMC bioinformatics 19, 1-10, 2018
1062018
ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers
L Coombe, J Zhang, BP Vandervalk, J Chu, SD Jackman, I Birol, ...
BMC bioinformatics 19, 1-10, 2018
862018
ntHash: recursive nucleotide hashing
H Mohamadi, J Chu, BP Vandervalk, I Birol
Bioinformatics 32 (22), 3492-3494, 2016
772016
Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art
J Chu, H Mohamadi, RL Warren, C Yang, I Birol
Bioinformatics 33 (8), 1261-1270, 2017
652017
Organellar Genomes of White Spruce ( Picea glauca ): Assembly and Annotation
SD Jackman, RL Warren, EA Gibb, BP Vandervalk, H Mohamadi, J Chu, ...
Genome Biology and Evolution 8 (1), 29-41, 2016
632016
RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes
KM Nip, R Chiu, C Yang, J Chu, H Mohamadi, RL Warren, I Birol
Genome research 30 (8), 1191-1200, 2020
50*2020
The Genome of the North American Brown Bear or Grizzly: Ursus arctos ssp. horribilis
GA Taylor, H Kirk, L Coombe, SD Jackman, J Chu, K Tse, D Cheng, ...
Genes 9 (12), 598, 2018
382018
ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs
L Coombe, V Nikolić, J Chu, I Birol, RL Warren
Bioinformatics 36 (12), 3885-3887, 2020
262020
Konnector v2. 0: pseudo-long reads from paired-end sequencing data
BP Vandervalk, C Yang, Z Xue, K Raghavan, J Chu, H Mohamadi, ...
BMC Medical Genomics 8, 1-10, 2015
262015
Kollector: transcript-informed, targeted de novo assembly of gene loci
E Kucuk, J Chu, BP Vandervalk, SA Hammond, RL Warren, I Birol
Bioinformatics 33 (12), 1782-1788, 2017
252017
Jupiter Plot: A Circos-Based Tool to Visualize Genome Assembly Consistency (Version 1.0)
J Chu
Zenodo. Available online: https://zenodo. org/record/1241235#. XA92q2hKiUk …, 2018
242018
Gaps and complex structurally variant loci in phased genome assemblies
D Porubsky, MR Vollger, WT Harvey, AN Rozanski, P Ebert, G Hickey, ...
Genome research 33 (4), 496-510, 2023
192023
Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph
BP Vandervalk, SD Jackman, A Raymond, H Mohamadi, C Yang, ...
2014 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2014
192014
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